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{xrst_begin bib}
{xrst_spell
  barendregt
  biegler
  chu
  metaregression
  negrete
  oortmarssen
  pirnay
  pp
  vos
  wachter
}

Bibliography
############

Flaxman et al. (2015)
*********************

Flaxman, A.D., Vos, T., and Murray, C.J., 2015. An integrative metaregression
framework for descriptive epidemiology.

Duration equation
=================

In the text, section title SYSTEM DYNAMICS MODEL OF DISEASE IN A POPULATION
gives as its first equation an integral for duration as a function of age and
time.

Barendregt et al. (2003)
************************

Barendregt, J.J., Van Oortmarssen, G.J., Vos, T. and Murray, C.J., 2003. A
generic model for the assessment of disease epidemiology: the computational
basis of DisMod II. Population health metrics, 1(1), pp.1-8.
https://link.springer.com/article/10.1186/1478-7954-1-4

Pirnay et al. (2012)
********************

Pirnay, H., Lopez-Negrete, R. and Biegler, L.T., 2012. Optimal sensitivity
based on IPOPT. Mathematical Programming Computation, 4, pp.307-331.
https://optimization-online.org/wp-content/uploads/2011/04/3008.pdf


DisMod-AT fixed effects distribution
************************************
fixed_effects_distribution_

.. _fixed_effects_distribution: https://dismod-at.readthedocs.io/latest/
   sample_command.html#fixed-effects-distribution

Wachter and Biegler (2006)
**************************

Wachter, A. and Biegler, L.T., 2006. On the implementation of an interior-point
filter line-search algorithm for large-scale nonlinear programming.
Mathematical programming, 106, pp.25-57.
https://link.springer.com/article/10.1007/s10107-004-0559-y

Cole, Chu, and Greenland (2014)
*******************************

Cole, S.R., Chu, H. and Greenland, S., 2014. Maximum likelihood, profile
likelihood, and penalized likelihood: a primer. American journal of
epidemiology, 179(2), pp.252-260.
``https://doi.org/10.1093/aje/kwt245``

{xrst_end bib}